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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPARCL1 ENSG00000152583

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Description

SPARC-like 1 (hevin) [Source:HGNC Symbol;Acc:11220]

Gene Synonyms

MAST9, PIG33, SC1

Location

Chromosome 4: 88,394,487-88,452,213 reverse strand.

GRCh37:CM000666.1

About this gene

This gene has 10 transcripts (splice variants) and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418378.1	SPARCL1-201	2994	664aa	ENSP00000414856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3622	B4E2Z0 C9JJR8 D6RA29 E7EU82 E9PC64 F5H331 F5H4Y3 Q14515	NM_001128310.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282470.6	SPARCL1-001	2906	664aa	ENSP00000282470.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3622	B4E2Z0 C9JJR8 D6RA29 E7EU82 E9PC64 F5H331 F5H4Y3 Q14515	NM_004684.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503414.1	SPARCL1-005	2520	539aa	ENSP00000422903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2Z0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434434.1	SPARCL1-002	950	141aa	ENSP00000416971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJR8 D6RA29 E7EU82 F5H331 F5H4Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541496.1	SPARCL1-013	818	18aa	ENSP00000445678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512317.1	SPARCL1-004	587	120aa	ENSP00000423448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA29 E7EU82 F5H4Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509407.1	SPARCL1-003	583	143aa	ENSP00000423483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJR8 D6RA29 E7EU82 E9PC64 F5H331 F5H4Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543631.1	SPARCL1-011	583	89aa	ENSP00000444832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EU82 F5H4Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000458304.2	SPARCL1-010	568	56aa	ENSP00000406251.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EU82	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535835.1	SPARCL1-012	561	127aa	ENSP00000438188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA29 E7EU82 F5H331 F5H4Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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