Gene: SLC6A4 ENSG00000108576

Description

solute carrier family 6 (neurotransmitter transporter), member 4 [Source:HGNC Symbol;Acc:11050]

Gene Synonyms

5-HTT, 5-HTTLPR, 5HTT, HTT, OCD1, SERT, SERT1, hSERT

Location

Chromosome 17: 28,521,337-28,563,020 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 5 transcripts (splice variants), 12 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000401766.2	SLC6A4-002	6543	630aa	ENSP00000385822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261707.3	SLC6A4-201	4516	630aa	ENSP00000261707.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	NM_001045.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394821.2	SLC6A4-001	2160	618aa	ENSP00000378298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRV0 B3VRV5 B3VRW0 J3KPR9 Q9NYN7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579221.1	SLC6A4-003	1069	72aa	ENSP00000463172.1	Nonsense mediated decay		B3VRQ0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578609.1	SLC6A4-004	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: SLC6A4 ENSG00000108576

Summary

EMBL-EBI User Survey 2024

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Gene: SLC6A4 ENSG00000108576

Summary