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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SETX ENSG00000107290

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Description

senataxin [Source:HGNC Symbol;Acc:445]

Gene Synonyms

ALS4, AOA2, KIAA0625, SCAR1, bA479K20.2

Location

Chromosome 9: 135,136,743-135,230,372 reverse strand.

GRCh37:CM000671.1

About this gene

This gene has 7 transcripts (splice variants), 2 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000224140.5	SETX-001	11100	2677aa	ENSP00000224140.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6947	Q7Z333	NM_015046.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372169.2	SETX-201	11103	2706aa	ENSP00000361242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6 Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393220.1	SETX-202	10917	2644aa	ENSP00000376913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436441.1	SETX-003	5730	948aa	ENSP00000409143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477049.1	SETX-004	4067	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474172.1	SETX-006	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464133.1	SETX-005	631	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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