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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS9D1 ENSG00000075399

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Description

VPS9 domain containing 1 [Source:HGNC Symbol;Acc:13526]

Gene Synonyms

ATP-BL, ATPBL, C16orf7

Location

Chromosome 16: 89,773,542-89,787,394 reverse strand.

GRCh37:CM000678.1

About this gene

This gene has 7 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389386.3	VPS9D1-002	2748	631aa	ENSP00000374037.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42220	H3BM58 Q9Y2B5	NM_004913.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561976.1	VPS9D1-001	2791	561aa	ENSP00000454244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM58	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565023.1	VPS9D1-007	775	232aa	ENSP00000455792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563798.1	VPS9D1-003	459	52aa	ENSP00000454889.1	Nonsense mediated decay		H3BNK1	-	-
ENST00000565452.1	VPS9D1-006	178	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568691.1	VPS9D1-004	838	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567379.1	VPS9D1-005	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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